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Hi team,
When using BUSTED-PH/contrast-fel to detect directional selection pressure, I found the overall dn/ds values are significantly differed in foreground and background genes. However, the res…
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Hi!
As you know we have many databases in cancer scout which is fantastic! We have found a new onw directly connected to drugs/resistance etc, it its really great and I wonder if it can be include…
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Since we added rules for scoring the resistance to HIV and HCV drugs, we could use the mutation positions to choose key positions when giving a coverage score. Presumably, we should continue to allow …
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I have few sequences I want to run MTB-CNN model and check the result. But I am confused about data preparation from fasta/fastq sequence files and run the scripts for drug resistance prediction. Coul…
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I have generated KEGG KO annotation results (_woltka classify_) and pathway results (_woltka collapse_ on KO results), and finally pathway coverage results (_woltka coverage_ on KO results with KEGG `…
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At the 5/16 meeting, we spoke about ways to re-organize Druggable Gene Categories for v5. I've done a preliminary analysis, mostly for my own benefit, but hopefully this spurs on ideas about how we co…
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As initially discussed through other channels, CBG developed VILOCA to detect potential drug-resistance mutations in wastewater data and they wish is to add the results of this analysis to the cov-spe…
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The inspiration for this task is the way nf-core uses the MultiQC reports to provide a single-file summary stats about various steps.
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MTBseq has an extension [list](https://github.com/ngs-fzb/MTBseq_source/blob/master/var/res/MTB_Resistance_Mediating.txt) of drug resistance SNPs with literature supporting each entry listed. This lis…