-
I would like to ask how Trust4 can directly analyze paired-end .fastq format data from the 10X Genomics platform for single-cell analysis, instead of analyzing BAM format data. Can you provide support…
-
Dear Developers,
First I want to thank you for the effort you made creating SOVAP and facilitating virome analysis to novices in the field like me.
I am writing you this e-mail to ask you about a pr…
-
Hello I am trying to run FastQC, but I have been receiving an error where file has failed to process. I have included the output below.
${PROG}/fastqc_v0.12.1/FastQC/fastqc AG2_R2_001.fastq.gz --e…
-
I would like to use fastp with input coming over a fifo. Since you're a single pass tool, it appears this should work. But no matter how I try to set things up, I get
```
[2024-07-15T17:46:51-05…
-
Hii Robert
I have a new MacBook Pro with following specifications
Chip Apple M3 Max
Memory 36GB
macOS Sonoma 14.1
I was trying to test the Bactopia using docker…
-
i have around 60 samples, that performed paired-end seq for metagenome, total ~400G clean data.
i have combine all forward reads and reverse reads, gained F.fastq,gz and R.fastq.gz. and than i run:
…
-
Hello, I have a few questions and observations about the behaviour of the --revcomb flag for when cutting off primers from paired-end data.
1. Using a single-read approach on F and R files separate…
-
Running fastqt as a command line works. But the following output is displayed.
Distributor ID: Ubuntu
Description: Ubuntu 16.04.1 LTS
Release: 16.04
Codename: xenial
`QXcbCon…
dridk updated
7 years ago
-
### Operating System
Windows 10
### Other Linux
_No response_
### Workflow Version
v24.04.2
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No response_
### EPI2M…
-
### Ask away!
Hi, I'm trying to specify the minimap2 parameter '--junc_bed' with a bed file of splice annotations to ensure the correct splice sites are mapped around my gene of interest, which is so…