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Hi,
I used --quantMode GeneCounts to generate a count table for my samples, after which I processed them with DESEQ2.
I noticed that a whole gene family is differentially expressed. (I think) T…
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when i tried to build a TE index,there always show me that
INFO @ Thu, 24 Oct 2024 11:14:53: Building TE index .......
chrA01 EDTA DNA/Helitron 1241 1375 . - . gene_id "nbis-gene-1"; transcrip…
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Hello!
I observe that during the execution of the program iqtree2 in compare_genomes, the parameter ‘’-o‘’ for specifying the outer class group is not included. Whether an alternative option should…
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Tour and/or Help screen.
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Hello,
I have been ruing wgd on a number of species to estimate a genome duplication event following the recipes from here:
https://wgdv2.readthedocs.io/en/latest/recipes.html#wgd-dating
I am…
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A nextflow pipeline that runs a comparative genomic analysis to understand the gene expansions and contractions for a selection of species
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This issue illustrates how NCBI Datasets API can be used to generates JSON blobs necessary for rendering filament pages (https://github.com/galaxyproject/brc-analytics/issues/130).
## Linked Ticket…
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The gene linkouts include Funnotate on this record, but there is no gene family assignment. One gets an uninteresting page from Funnotate.
[aesev.CIAT22838.gnm1.ann1.Ae0000010](https://jekyll-dev.l…
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Simplify the multiple steps of gene family filtering in two steps:
1. if
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Hello Folks,
I realised this issue might be similar to https://github.com/hahnlab/CAFE5/issues/69#issuecomment-1487468573, but I think there are unsolved questions in the closed issues 69.
I found t…