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**Authors:** Benjamin C. Haller, Philipp W. Messer
**Abstract:** Individual-based, genetically-explicit modeling is an essential tool for connecting empirical population genetic patterns to hypothe…
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Hello,
When using the function `calc.genoprob()`, it tries to retrieve data from `ftp.jax.org`, such as in lines 541-550 in `calc.genoprob.R`:
```
} else if(array == "gigamuga") {
snpf…
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These data are not ready to be read into R. It's not immediately obvious that they're all even comparable.
Also, your hypothesis is far too vague. What do you mean by genetic diversity? This can be…
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https://www.natureworldnews.com/articles/45834/20210427/sumatran-rhinoceros-striving-genetic-diversity-despite-extinction.htm
There is a rhino picture at the beginning of the article, but after I p…
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## SLiM 2: scriptable, interactive, fast evolutionary modeling
**Authors:** Benjamin C. Haller, Philipp W. Messer
**Source code:** [SLiM home page](https://messerlab.org/slim/)
**License:** GPL
…
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Currently neuraminidase clades are being classified at a depth that does not show the full scope of genetic diversity. Neuraminidases need to be reclassified by splitting up current clades. After recl…
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This is a rather specific idea, but one that, as far as I know, is not well implemented in R. Effective population size (Ne) gives an estimate of the number of individuals that contribute alleles into…
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Hi there, I keep getting this error when I try to use the function **genind_to_genepop**:
```
Error in if (as.character(loc_all[col_loc[het[1]], "allele"]) < as.character(loc_all[col_loc[het[2]],…
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### Context
The glycoprotein complex (GPC) is the only surface protein of the Lassa virus (LASV) and plays a crucial role in mediating entry into host cells. It is also a primary target for neutr…
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Each strain that circulates and initiates an infection should be given a unique strain ID (allowing for integration of spatial genetic epi modelling (with Albert/Josh)
Each infection that an individu…