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### Description of feature
It is equal to percentage of reads mapped to the genome.
Possible software: [WGSIM](https://github.com/lh3/wgsim)
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### Data Owner Name
The Rieseberg Lab at the University of British Columbia
### Data Owner Country/Region
Canada
### Data Owner Industry
Life Science / Healthcare
### Website
http…
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It is important to consider genome accessibility when computing rates from genomic data.
scikit-allel has options to include an ["accessibility mask"](https://scikit-allel.readthedocs.io/en/stable/…
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Hi Rory,
I am simulating SARS-CoV-2 diluted in a bacterial environment. My configuration file looks as follows :
```
output_path = "$SIM_DIR/pod5_files"
target_yield = $TARGET_YIELD
pore_type =…
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Hello,
I am trying to run the pipeline for chicken samples and have tried to create a custom genome reference for the pipeline. However, after finishing the steps here [https://github.com/ENCODE-de…
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![Fig7_TwoPops](https://github.com/user-attachments/assets/4d3126cd-aa4c-454c-93c3-6dcce31cf3b6)
This is a figure from the sparg SMBE poster. To generate the genome bar, I wrote a custom variation …
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Hello,
I had attempted to run DRUMMER using the exome mode across my genome reads as follows:
```
mkdir -p /rhea/scratch/brussel/vo/000/bvo00030/vsc11010/results_mouse_debugging/drummer/
mkd…
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Hi Amrviz Team,
I recently installed your pipeline on my HPC, which has a substantial number of CPUs. The installation went smoothly, and I successfully ran and visualized the output using your sampl…
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Hello dear developers,
I have run PECAT on a diploid plant genome (heterozygosity=3.3) and obtained a primary (4.7Gb) and alternate (2.6Gb) set and haplotype1 (4.7Gb) and haplotype2 (2.8Gb). Do yo…
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Hello! I am attempting to patch a scaffold-assembled reference genome of a congener of my focal bird species (TANG, in the code below) with a chromosome-level reference genome of a more distantly rela…