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Hi,
I would really like to make this code work, but I am getting IndexError: list index out of range at line 160. I am using python 3.10.8.
My command is:python p2c.py /nobackup/qtwh28/SnowPet/G…
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Hi, i have two genomes from the same species, and i run braker3 to train the first genome species model, so how to apply the the first genome species model to the other genome? use parameters "--useex…
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This feature aims to enhance the current genome encoding model by integrating an **autoencoder** to compress and encode neural network weights into a latent vector. The autoencoder will replace the di…
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I am going to be trying out `polyalign filtered`, and then `polypolish polish` on a 2.6Gb mammalian genome assembly soon (on a high performance cluster). I realise this is far outside the scope of wha…
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We have FAIRSharing records for all of the MIxS checklist. Is it possible to add links to those into our LinkML?
There may be an appropriate place holder in LinkML already for those sorts of things? …
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Hi!
I'm running the new OrthoFinder3 on two species sets - Species51 and Species67. Species in both represent animal phyla or their major unicellular outgroups. Phylogenetically, it is structured a…
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My idea is to to include multiple genomes in the genome 2 argument as negative and only the desired targets to the genome 1 argument to look for primers to differentiate genomes in the genome 1 argume…
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Add available information about existing Publications.
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Joseline said that if the reference file has a lot of Ns, it might throw a lot of SNPs.
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I tested these two links, and they worked as expected.
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=snp&id=6060535&retmote=rsr
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esear…