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**Authors:** Fiona C. Wood, Yonas I. Tekle
**Abstract:** The advent of molecular phylogenetics has led to numerous cases where species determination differs based on molecular or morphological data. …
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Hi!
I am using Hmmer3 with bivalve genomes looking for 70-80 aa genes. BUSCO scores for the genomes are in the upper 90s (96-98% complete for BUSCO Metazoa) and most assemblies are chromosome-scale…
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```python
import sys
import gzip
from Bio import SeqIO
import sourmash
from sourmash import MinHash
import concurrent.futures
def create_sourmash_sketch(genome, ksizes, scale):
# Create …
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Hello there,
Thank you so much for developping this package. It looks very neat and clean.
I am trying to display the distances between several domains in my reference genome. My question theref…
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https://doi.org/10.1038/nature11503
>The genome-wide identification of pairs of interacting proteins is an important step in the elucidation of cell regulatory mechanisms1, 2. Much of our present kno…
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Under the subheader [System Requirements](https://github.com/ComparativeGenomicsToolkit/cactus#system-requirements), it says;
> For primate-sized genomes (3 gigabases each), you should expect Cactu…
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Hello,
I'm using the development version of SCENIC+.
When running the snakemake pipeline, it seems to get stuck on 'download_genome_annotations'...
Contents of my Snakemake folder:
-rw-r…
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Hello,
If I wanted to do exact k-mer comparisons between genome assemblies could I simple use `sourmash sketch` with `scaled=1`?
Is this a stupid thing to do?
I have a limited set of bacterial…
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Hi there,
Based on the questions raised here #88 and your kindly help, I have got some results now. At the same time, I have encountered some new problems and would like to discuss here.
1. Whe…
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Hi,
I have found that `sourmash sig describe` returns an error if the signature file is located in a subdirectory that contains the string "sourmash". I am running sourmash version 4.8.5.
## Set…