-
Hello, I am using ANGSD to, among other things, examine diversity/neutrality stats across the genomes of several populations. I'm working with illumina genome data that are 3-6X. No matter how I choos…
-
FitHiChIP is an explicit and clearly written normalization method for HiChIP data processing.
Beyond significant loop calling, I want to develop a genome-wide background model by using FitHiChIP-prod…
-
**Lightning talk:** "phASE-Stitcher: A tool for phasing genome wide haplotype in F1 hybrids using Phase Informative Reads"
**Authors:** Bishwa K. Giri, Dr. David L. Remington
**Abstract:**
Next …
-
This issue contains monthly updates to an automatically ranked list of PubMed papers as candidates for curation in the Bioregistry. Papers may be relevant in at least three ways:
(1) as a new prefix…
-
We would like to verify whether there is a significant difference in efficiency of the hm pipeline for seq GWAS.
1. Calculate the average % of dropped and unable to harmonise variants among a repres…
ljwh2 updated
7 months ago
-
1. [Integrating ChIP-seq with other functional genomics data](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888983/pdf/ely002.pdf)
2. [2014-nature review-Identifying and mitigating bias in next-gener…
-
Hi Cloufield team, it was a struggle for a GWAS newbie like me that finally went to the [SNP-Heritability estimation by GCTA-GREML section](https://cloufield.github.io/GWASTutorial/14_gcta_greml/). No…
-
Hi @anglixue,
I have been trying to run mtCOJO on a trait (GWAS summary available here: ) while adjusting for another trait (GWAS summary available here: filename: GSCAN_CigDay_2022_GWAS_SUMMARY_S…
-
The chromosome prefixes from the Arachis genome initiative are funky -- at least relative to the Data Store funk. They have the form "Gensp.[AB]*\d\d". I think this derives from our proto-yuckificatio…
-
I'm trying to estimate parameters for finemapping and for some reason I the first iteration estimates the gene prior to be zero:
```
ctwas::ctwas_rss(
z_gene = z_gene_subset,
…