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I think it would be useful to have a module for this recently published genome assembler [hifiasm](https://bioconda.github.io/recipes/hifiasm/README.html)
- [x] This module does not exist yet with …
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Thank you for providing herro.
I've tested it on four ONT datasets one of which is public.
The number reads and nucleotides after correction are very variable, ranging in my case from 2 to 20% for…
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Hello Dr. Cheng and community,
I recently used hifiasm to assemble a allotetraploidy genome, and my command is `hifiasm -o out -t60 --primary --h1 hic_1.fq.gz --h2 hic_2.fq.gz ccs.fastq.gz`. HiFias…
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I tried istalling it with conda and stand alone but still it didnot work .
TRASH_run.sh: 3: Bad substitution
/vol/pac/Software/TRASH
TRASH will be run with /vol/pac/New/old_TRASH_results/TRASH/…
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Hi,
As always, thank you for your tools, innovation, and help on issues.
I've launched a HiFiasm job twice now. Both times it failed to complete in 7 days.
The first time it did finish making…
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I setup my config file and I run snakemake --cores all --use-conda --configfile config_argania.yaml
here is the error :
Config file config/config.yaml is extended by additional config specified vi…
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Hello,
This is similar to [issue#69](https://github.com/chhylp123/hifiasm/issues/69) but for me it is unsolved yet. I am running hifiasm v 0.14.2-r315 to assemble ~3.5Gb genome. My hifi fastq files…
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Hi,
Thanks for developing hifiasm!
I`m working on a diploid genome using only ccs reads by default hifiasm parameters. I got an assembly with contig N50 ~15 M and the longest primary unitigs is l…
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Hi,
I have used hifiasm successfully several times in the past. However lately I am running into some strange behaviour.
The subject I am trying to assemble is half the genome size of Californian …
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I wasn't paying enough attention to hifiasm as I should have, and just realized that hifiasm can do trio-binning too.
Though unsure if it'd work on non-HiFi reads (trio-canu does), we should find s…