-
`{"detail":"Command '['netMHCpan', '--version', '_MHCTOOLS_VERSION_SNIFFING']' returned non-zero exit status 1."}`
```
# /opt/netMHCpan-4.1/Linux_x86_64/bin/netMHCpan --version _MHCTOOLS_VERSION_S…
-
Hi,
I tried running the example data with the following code and got the following error.
Thanks
Robbie
```
set -e
tmp_dir=$(mktemp)
rm ${tmp_dir}
mkdir -p ${tmp_dir}
cd ${tmp_dir}
…
-
Hi,
I want to use polysolver for HLA-typing, thank you very much for developing the conda version of polysolver! (I am not root user so cannot install it using docker as suggested by Broad Institute)…
-
Hi
For some downstream analysis I need to identify the fasta sequence used for the hla allele called.
For instance, if optitype called `A*01:01` I would need to know its fasta sequence, which would…
-
In order to characterize sequences better the amino acid sequence should be annotated at the feature level. For example: locus: HLA-B term: exon, rank:2 amino acid sequence: KYGNP... . Also need to …
-
when i run :
```
$ ./sc_hla_count_linux -b outs/possorted_genome_bam.bam -c outs/filtered_feature_bc_matrix/barcodes.tsv.gz -o ./outs -d HLA/IPDIMGT/download
```
report it …
-
Hi,
I would like to use epitopepredict for my predictions. Tepitope and mhcflurry work, but netMHCpan does not. I use the same test.config file for all of the mentioned predictors. However, netMHCp…
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![image](https://github.com/nmdp-bioinformatics/gfe-db/assets/8644904/aed5b5ea-19b5-43fd-ab34-cab8071138fe)
-
Hi,
I am analyzing my SNPs from hg19 using your tool. But I got errors when I was running the bmarkergenerator (and no output).
Here is the error I got.
#///////////////////////////
Error:…
-
Hello,
I'm trying to run scHLAcount but having this error.
Sharding sequences...
Got 373889 sequence chunks
Assembling 114 shards...
Done separate de Bruijn graph construction
Starting mer…