nmdp-bioinformatics gfe-db issues

nmdp-bioinformatics / gfe-db

Graph database representing IPD-IMGT/HLA sequence data as GFE

https://gfe-db.readthedocs.io

GNU General Public License v3.0

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issues

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Remove support for deploying Neo4j to public subnet

#114 chrisammon3000 opened 2 months ago
1
Run build job in private subnet

#113 chrisammon3000 closed 3 months ago
0
Support rancher desktop

#112 pbashyal-nmdp closed 4 months ago
0
Skip Configuration and Validation of VPC Endpoints

#111 chrisammon3000 closed 4 months ago
0
Mount EBS volume for Amazon Linux 2

#110 chrisammon3000 closed 4 months ago
3
Configure CloudWatch Logs Agent for Amazon Linux 2

#109 chrisammon3000 closed 4 months ago
0
Deployment configuration changes

#108 chrisammon3000 closed 4 months ago
0
Fix backup & restore workflows and update README

#107 chrisammon3000 closed 4 months ago
0
Deploy Neo4j on Amazon Linux 2

#106 chrisammon3000 closed 5 months ago
0
version .1 accession number

#105 mmaiers-nmdp closed 4 months ago
1
Model that uses the SV name in places of the ID for IPD_accession

#104 mmaiers-nmdp opened 6 months ago
1
Use SV field instead of AC field for IPD_Accession name property

#103 chrisammon3000 closed 6 months ago
0
Ingest data from new commits in IMGTHLA repository

#102 chrisammon3000 opened 7 months ago
1
Private subnet configuration for Neo4j 5 and Docker for running gfe-db locally

#101 chrisammon3000 closed 7 months ago
1
Bump lxml from 4.6.3 to 4.9.1 in /gfe-db/pipeline/jobs/build

#100 dependabot[bot] closed 10 months ago
0
Bump lxml from 4.6.3 to 4.9.1

#99 dependabot[bot] closed 10 months ago
0
WIP: Set feature service url

#98 pbashyal-nmdp closed 10 months ago
0
Neo4j 5.9.0 upgrade

#97 chrisammon3000 closed 9 months ago
1
HAS_ACCESSION has a scalar for release; should be a list/vector

#96 mmaiers-nmdp closed 7 months ago
2
an odd GFE

#95 mmaiers-nmdp closed 7 months ago
1
Use existing build output

#94 chrisammon3000 closed 1 year ago
0
submit_date should be the date the allele was "first" submitted

#93 mmaiers-nmdp opened 1 year ago
1
Use previous data for build pipeline if it already exists

#92 pbashyal-nmdp opened 1 year ago
0
Dont load MACs

#91 pbashyal-nmdp closed 1 year ago
0
Deploy with optional VPC

#90 chrisammon3000 closed 1 year ago
0
Issues for 1.0

#89 pbashyal-nmdp opened 1 year ago
2
Handle backups, validate build output and execute validation queries in state machine

#88 chrisammon3000 closed 1 year ago
2
Parameterize VPC, subnet and update DNS A record

#87 chrisammon3000 closed 1 year ago
0
Parameterize VPC, Subnet & DNS record

#86 chrisammon3000 closed 4 months ago
0
Fails pyard 1.0.1 when there's no MAC tables

#85 pbashyal-nmdp closed 1 year ago
0
Upgrade pyard to 1.0.1

#84 pbashyal-nmdp closed 1 year ago
0
Renew database SSL certificate

#83 chrisammon3000 closed 1 year ago
0
Upgrade the pipeline trigger logic to run on updates to previously processed release branches

#82 chrisammon3000 opened 1 year ago
1
gfe-db build process failing due to seq-ann exception (Internal Server Error in Feature Service)

#81 chrisammon3000 closed 4 months ago
0
Error Alarm email notifications

#80 chrisammon3000 closed 1 year ago
1
Backup & Restore Neo4j

#79 chrisammon3000 closed 1 year ago
1
odd empty GFEs

#78 mmaiers-nmdp opened 1 year ago
4
GFE not unique?

#77 mmaiers-nmdp closed 7 months ago
3
Fix failure when `limit=''`

#76 pbashyal-nmdp closed 1 year ago
0
Fix incorrect comparison operator causing 3350 to fail

#75 chrisammon3000 closed 1 year ago
0
Build process completes with no output for version 3350

#74 chrisammon3000 closed 4 months ago
0
Validate CSV files for the release are available in S3 before continuing load process

#73 chrisammon3000 closed 4 months ago
1
HAS_IPD_ACCESSION release attribute should be a list not scalar

#72 mmaiers-nmdp opened 1 year ago
1
Update Model with accession GFE->Accession

#71 pbashyal-nmdp closed 1 year ago
3
missing feature in database running at https://dev-gfedb.b12x.org:7473/browser/

#70 mmaiers-nmdp closed 7 months ago
3
Consider changing the new schema (incremental_load)

#69 mmaiers-nmdp opened 1 year ago
1
Minor fixes and improvements towards stable release

#68 chrisammon3000 closed 2 years ago
0
DNS configuration for deployment

#67 chrisammon3000 closed 4 months ago
1
AMI update and DNS Configuration for Neo4j

#66 chrisammon3000 closed 2 years ago
0
Add IPD_Accession Node

#65 pbashyal-nmdp closed 2 years ago
0