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editor preferred term: Illumina HiSeq X Five
alternative terms: HiSeq X Five
textual definition- A DNA sequencer that consists of a set of 5 HiSeq X Sequencing Systems.
definition source for the …
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Hi,
I found a description in the tutorial:
"Our standard pipeline is to perform single-index 25x25 PE Illumina sequencing on up to 90 pooled samples on a single HiSeq 2500 flowcell, where each sampl…
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A user is having an issue when their file paths have spaces in an arguments file. This issue does not exist when there is no arguments file. It would be helpful for GATK to be able to parse shell quot…
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Generated from https://github.com/jdereus/labman/pull/328#discussion_r213092518 and https://github.com/jdereus/labman/pull/328#discussion_r213091133 .
If we DO need to make some decisions by sequen…
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Hi all,
I am trying to install metAMOS on CentOS 6.5, after installing all the program and dependencies guide suggesting to check if the program is installed well. To do that, i was asked to run run_…
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editor preferred term: Illumina MiSeq FGx
alternative terms: MiSeq FGx
textual definition: First fully validated sequencing system for forensic genomics (FGx).
definition source for the textual def…
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As part of 4-APR meeting.
- Focus on homogenous (sequencing) datasets
- (IN FUTURE) Accommodate hybrid datasets and reflect on the final results (nanopore/illumina)
@vrennie @TimHHH , where exa…
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Hello,
I am currently trying to run finder on three whole genome samples:
1. Sequenced with Illumina HiSeq x ten
2. Sequenced with Illumina Novaseq 6000
3. Sequenced with PacBio SMRT
Samples…
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editor preferred term: Illumina MiSeq Dx
alternative terms: MiSeq Dx
textual definition: The first FDA-cleared next-generation sequencing system for in vitro diagnostic use.
definition source for t…
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- Whatshap - 1.7, Python - 3.10.8
- Conda
- Which command-line parameters you used
- whatshap haplotag -o haplotaggedchr22.bam --reference Homo_sapiens_assembly38.fasta --region chr22 phased.vcf.…