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Hi,
The command `arcasHLA reference --version` fails for specific versions (it seems like every reference > `3.34.0`).
```
arcasHLA reference --version 3.35.0 -v
----------------------------…
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Hello,
I have been using Docker build of OptiType for my project, and am satisfied by its performance.
One concern is that it always use reference sequence & alleles in /data folder of the Docker im…
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using current commit, in a docker / conda environment
##############
docker run --rm -v `pwd`:/data -w /data rna-hla-hlapers \
/bin/bash -c '/opt/conda run --no-capture-output -n hp-env…
jfass updated
2 years ago
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The following popped up in the `debug.log`:
```PHP
PHP Fatal error: Uncaught Exception: Serialization of 'CURLFile' is not allowed in /var/www/vasilis.rocketlabsqa.ovh/htdocs/wp-content/plugins/ima…
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Hi,
Just wondering how difficult it would be to create tags for other species. I am currently using Repseqio to create libraries for MiXCR but want to do a comparison of analysis. Is there a pipeli…
tprkp updated
8 months ago
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Hi - I stumble upon your tool HLApers and the associated library hlaseqlib. I find the method `hla_read_alignment` quite interesting as you know, the IMGT database does not contain the complete sequen…
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Betas:
TRBV8*01 is not yet in TCRdist, but is http://www.imgt.org/IMGTrepertoire/index.php?section=LocusGenes&repertoire=genetable&species=human&group=TRBV\
Alphas:
TRAV15*01, TRAV28*01 - are in …
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IMGT/HLA version 3.22.0 at appears to have been loaded correctly, except locus HLA-A cannot be retrieved from the service
https://gl.nmdp.org/imgt-hla/3.22.0/locus/0.html
returns
`Locus not found`
…
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With the newest version of ANARCI, I'm getting weird behavior in the kappa chain (IGKV2-30*01).
Submitting without J region gives correct numbering:
```
anarci --scheme imgt -i DVVMTQSPLSLPVTLG…
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Hi Quentin,
How did you obtain the indices of where the anchor index is for the J and V genes in your models? Is there implementation or a feature in IGoR so that it can do this? If not, what was t…