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Hi! I'm trying to import the results from ghostkoala to anvio and I'm following your procedure https://merenlab.org/2018/01/17/importing-ghostkoala-annotations/ but when I arrive at this point:
pytho…
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Within BLAST2LCA tool, a query may be assigned multiple KO annotations,
the parser to build the contig.rels ignores the 2nd annotation onwards.
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Error in `ggplot_add()`:
! Can't add `e2` to a object.
Run `rlang::last_trace()` to see where the error occurred.
> rlang::last_trace()
Error in `ggplot_add()`:
! Can't add `e2` to a object.
…
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Hi,
I am having an issue in the pathway annotation in ggpicrust2. I have tried the other workflow with the same results. I'm not behind a firewall or proxy, I can access the url on my browser and hav…
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The schema has inline docs detailing the mapping but we should provide a higher level guide. I will sketch out in this ticket and then this can be turned into docs on the site. I'm doing quickly so if…
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Hi, I’ve been running DiTing with 174 marine metagenomes, which took ca. 4 months. Then after the KEGG annotation was done, the program failed (shown below). I am wondering whether I could restart the…
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1. Using the latest version, an error was generated.
```
❯ ../bin/seq2fun --sampletable sample.txt --tfmi birds/birds_v2.0.fmi --genemap birds/birds_annotation_v2.0.txt -w 1 --profiling -V --output…
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Hi,
I have annotated a set of MAGs using the standard database mode. I am looking through the annotation results and realized that all genes identified by either swissprot or tremble do not match t…
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Hi again!
I have two questions about converting KOs to KEGG pathways.
Regardless if I am analyzing KOs or KEGG pathways, I am using the "pred_metagenome_unstrat.tsv" as my input (please let me k…
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Hi,
i set and download kofam_scan-1.3.0 as follow steps:
conda create -n kofamscan
conda activate kofamscan
conda install -c conda-forge ruby
conda install -c bioconda hmmer
conda install -c …