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```
$ python3
Python 3.10.12 (main, Nov 20 2023, 15:14:05) [GCC 11.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from SigProfilerSimulator import SigProf…
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Dear developers,
Thank you very much for developing and mantaining polyfun.
I have been running susieR fine-mapper independently before trying it out within polyfun. The susieR team has a diagn…
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hi,
I am encountering an issue with the PhaBOX software while running the analysis. Specifically, I receive a ValueError when the software attempts to build the sparse matrix in the build_pc_matrices…
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### what is this
In #88 there has been discussion on kind-1984, and reactions used to mark something as negative. A suggestion in #89 has been brought up for apps to consider not conflating reactions…
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**8/14/24**
After much discussion during the Sprint Review stakeholders want to see the entire interview process automated not just the Interview itself.
During work session with Diana we divided th…
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Description:
After uploading a gene counts matrix and corresponding metadata file, I performed DE analysis, then created a list of up and down scored genes. For each list I performed STRING and Wikip…
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Hi, I have updated my Spectre to 1.2.0, and also updated R and R studio to the latest build.
When I run the new advanced spatial workflow, everything works great and the addition of the regions and…
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Hi team,
I am trying to build a pipeline for fine-mapping with Susie. My results are sometimes off. I'll describe about my input data and what are the issues I am facing, please help me resolving t…
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## Context
Curators currently use [squidpy.read.visium](https://squidpy.readthedocs.io/en/latest/api/squidpy.read.visium.html#squidpy-read-visium) as a starting point to create an anndata from spac…
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Hi,
I am working with a very larger sc/sn RNA-Seq dataset. Starting from an h5ad file have used BPcells package to load data in-memory as follows:
`raw