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Dear tanghaibao,
Thank you for developing such a good collinearity tool. I realize that you set the Y-axis length of the mcsan_layout file for your drawing to 1, which is handy when there are l…
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When I run "python -m jcvi.graphics.synteny blocks scz_zj2.bed blocks.layout", the last step of MCScan, it got a error that "IndexError: list index out of range". The details are as follows:
[18:01:…
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We are running an example dataset and it's failed with `"rice.cds does not exist"`.
Any advise?
Here is the complete log file:
```
$ genetribe core -l aet -f rice
====================…
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Hi,
Thanks for you nice hifiasm!
I have a haploid plant sample (wu just guess from previous researches and experience).
The WGS estimatics size is ~2.1G with the first kmer peak, the hifi da…
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Hi,
I was trying to install NORTH on linux. An error occurred when I run "npm start" with reporting "Failed at the NORTH@1.0.0 start script 'electron .'" The npm-debug.log shows:
```
0 info it …
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Hello,
I am generating a synteny plot using
```
python -m jcvi.graphics.karyotype --figsize=10x13 --chrstyle=rect seqids layout
```
It works really well. The chromosomes I am plotting have ma…
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Hi, when running SubPhaser i get the following error:
```
Traceback (most recent call last):
File "/home/531734/.conda/envs/SubPhaser/bin/subphaser", line 33, in
sys.exit(load_entry_point…
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I have almost finished the whole synteny visualization but at the very moment I think I can finally make it, I find it returns to me: ERROR Size of `Chr01` is empty. Please check kar…
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Hi Colin,
This is not an issue but a request to update the README with some more examples. For example I would like to see the GC_ContentXY, GC_Content, and a GC_Skew for my genomes. I load the gen…