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Hi community,
We are interesting using minfi to analyze mouse 285k methylation data. Is there any chance that Minfi can support this set of annotation, or any alternative suggestion is welcome. Tha…
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Hello,a few days ago I read a paper "MethylC-analyzer: a comprehensive downstream pipeline for the analysis of genome-wide DNA methylation" and I am trying to run the code "python MethylC.py command m…
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* **PTHR ID & PTN node:**
GO:0009063 | amino acid catabolic process | IBA with PTN000480319 , locus:2176446 , P38117
* **Sequences with problematic annotation (ID + gene/protein name):**
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Sam Bogan Review of “DNA Methylation Analyses” by Steven Roberts, Sam White, and Yaamini Venkataraman
link: https://d.pr/f/332Q5v
Original text is in blue. Suggested text is in red.
General Feedb…
sr320 updated
6 months ago
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Hello,
I am attempting to run glint using conda 23.9.0 and Python 2.7.15. My data are from the EPIC chip v2 and CpGs annotated using [this annotation package](https://jokergoo.github.io/IlluminaHum…
cewim updated
8 months ago
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Following discussions amongst RNAcentral members (and specifically with Michelle Scott and Ruth Seal), we'd like to propose deleting the children of 'C_D_box_snoRNA' and 'H_ACA_box_snoRNA' (in the ncR…
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Hi,
I am wondering if there is a way to tie the anno_enriched color to the row_split?
For example, below if I set ngroup1 to 10, setting anno_enriched to the color of partition will correctly color …
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Hello, I am trying to run your code for "predicting new data" part. I follow all your command from creating new environment, install the requirement based on your txt file, until running the bash scri…
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Hi All, first wanted to thank you for developing this tool. I work in a lab that currently focuses on pathogenic species of bacteria that are associated with the microbiome of various tumors and are i…
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Following terms are request for supporting annotation of Beta Cell Genomics studies.
DNA methylation profiling by ChIP-chip assay
epigenetic modification assay
transcription profiling by MPSS assa…