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### Context
See https://github.com/nextstrain/monkeypox/pull/72#issuecomment-1162442758
### Possible solution
GenBank urls can be specially added as `https://www.ncbi.nlm.nih.gov/nuccore/`
URLs …
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### Current Behavior
When debugging something with Bryan, I wanted to quickly visualise a bare bones tree we had produced without metadata. `augur export v2` does not require metadata to be present. …
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Matthijs Welkers mentioned that he had tried to use Nextclade's primer feature with monkeypox (he has published an amplicon tiling scheme for nanopore) but that he got an error when he tried using his…
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Datasets of cumulative number of COVID-19 confirmed/recovered/fatal cases accelerated studies of data analysis with math models. Regarding monkeypox, "Confirmed" is now provided at this great reposito…
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Équivalent front de l'issue https://github.com/CovidTrackerFr/vitemadose/issues/689.
L'objectif est de permettre aux utilisateurs de rechercher des créneaux de vaccination contre la variole du sing…
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### Actual Outcome
When no filters are selected, the value in modal at the moment is of COVID-19.
### Expected Outcome
When no filters are selected, the value in the map modal should be the sum of…
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In the last of a 7-contig monkeypox genome assembly, RATT produces a feature like this one at the top:
```
FT repeat_region complement()
FT /note="ITR"
FT …
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On [Slack](https://bedfordlab.slack.com/archives/C03G8HQEV18/p1660566774729589), @emmahodcroft pointed out that we are labeling the release date as `date_submitted` in the metadata TSV. These two date…
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Hi,
I imagine this is an issue I have produced but just in case. Does this error log mean anything to you?
6:08:43 PM: ────────────────────────────────────────────────────────────────
6:08:43 …
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### Context
Sometimes one wants to use multiple independent clade systems, like clade, outbreak, lineage in monkeypox or whole genome clade and G gene clade in RSV
Right now, augur clades always o…