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Hi,
I have been testing pVAC-seq with a few samples. For each sample, I have typically 150-400 somatic PASS mutations, of which ~40-75 are missense variants. I am using quite a new version of pVACt…
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Help: please tell me how to solve this problem, thanks!
$ /path/Anaconda2/bin/deephlapan -P LNIMNKLNI -H HLA-A02:01
Using TensorFlow backend.
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child of #3
arkal updated
6 years ago
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I reviewed the publication:
https://academic.oup.com/bioinformatics/article/39/11/btad659/7330407
I think that the pipeline used both bam files from RNAseq and DNAseq to call for the long indel. Th…
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Thank you very much for your excellent work.
I encountered some errors while running my own data following the [tutorial.](https://snaf.readthedocs.io/en/latest/tutorial.html) Here is the error log:…
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Hi,
I am attempting to use antigen garnish to predict neoantigens from fusion proteins predicted by arriba/starfusion/fusioncatcher.
I took the predicted peptides from those programs (quite long, mi…
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Hello!
I've seen in the changelog that for DUPs the start position was changed from 0-based to 1-based. What's the case for the rest of the variants, are they 0-based or 1-based?
Best regards,
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Dockerhub Container: mskcc/neoantigenediting:1.0
command: python /usr/bin/align_neoantigens_to_IEDB.py
The workdir needs to have the input in a `data` folder of the structure
data/id_1/id_2/Patie…