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### Description of the bug
## Summary
The nextflow version in the gitpod is too low for the demo workflow. I used the Gitpod environment as described in the [nf-core/demo tutorial](https://training.n…
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sorry this feels very draft status. move it into a another PR before merging this one
_Originally posted by @mashehu in https://github.com/nf-core/modules/pull/6286#discussion_r184690…
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Hello Team!
I built a reusable sub workflow for performing BUSCO on genome alone, or on genome and annotation. I have used it in two other pipelines. It is currently sitting in my own modules repo: …
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Hi,
We would be very interested in adding micro-sam into the nf-core framework (https://nf-co.re) where we are pushing for spatial omics and microscopy tools and workflows. It is a community that i…
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### Description of feature
When I do a mass update of all modules in pipeline using `nf-core modules update`, and I preview each change, the output is very hard to read for where one module's diff st…
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### Description of feature
It looks like several of the samtools modules can be switched to nf-core versions
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### Description of feature
Individual commands have been added to their own issues to keep the discussion focused.
Listed in order of priority of implementation:
- [x] #1884
- [x] #1883
- […
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### Description of the bug
I have been processing tumor normal samples using sarek and I have results for 6/14 samples
The pipeline stopped and I tried re-running it but no luck. What I am trying now…
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### Description of the bug
I get the error
```
ERROR ~ Cannot invoke method endsWith() on null object
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### Description of the bug
Idk why, If I try to delete the two tools which report error, it will report for another problem
-- Check script '/root/.nextflow/assets/nf-core/sarek/main.nf' at line: 34…