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Dear developer,
I am extremely interested in the software you are distributing. Precursor m/z correction was a long time issue for LC-MSMS data I normally acquire on Bruker Impact II instrument. …
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Hello! I'm trying to run `eventalign` for a dataset of small oligonucleotides of size 100nt, but most of the reads fail with either "no alignment" or "not calibrated".
This is the command that I ex…
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Thanks for the nice tool! Is it possible for this tool run against the customed microbial genomes?
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
3.12.5 (main, Aug 6 2024, 19:08:49) [Clang 15.0.0 (clang-1500.3.9.4)]
CP…
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# Some thoughts about the evaluation of the PFM submitted by applicants
- **PFM**: position frequency matrix
- **PWM**: position weight matrix
See the [benchmarking protocols](https://ibis.auto…
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Hi @inodb
I ran genome nexus using the docker container by converting the input VCF to MAF. The output log file and MAF are attached (in text format)
1. As you can see, the log file mentions t…
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@related-sciences appreciates all the great work by the OT team and noticed something small when upgrading to 24.06.
Running the following on BigQuery, which currently is based on the 24.06 release…
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Hello again!
This is not a usage/implementation question as before but, rather, a request for troubleshooting advice.
So, we recently performed an experiment where we used MULTI-seq to multiplex…
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Hi Quentin
I haven't managed to find any information about how IGoR handles allelic variants presented in models. In default models some IGHV, TRAV and TRBV genes have several alleles (up to 7) and…
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This is not trivial for VCF-based input, since the sequences of each group are not known. It would be technically possible to reconstruct each group specific sequence as diagnositic sites are being se…