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Hi,
Your "hgnc2pfam.rdb" is completely outdated, and so all lollipops mutations don't match correctly.
It would be nice to update it, or in a more reliable and sustainable way, permit the user to …
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Hi Dr. Charles Murphy,
Thank you for developing AGFusion and making it publicly available.
I would like to use agfusion for ensembl >v95, and it seems
**1. I will have to build the database …
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Hello, no idea if anyone still pays attention here, but I was wondering if there is a way to get the systematic IDs out of IDEP for GO analysis. For example the output
. MSAs retrieved from InterPro are also provided in this format.
It would be handy if…
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If my protein does not belong to an explicit pfam family, how to generate a new sequence?
I guess: extract the closest pfam family(or several families) to fine-tuning the progen2 pretrained model, ri…
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Hi,
I´m trying to run traitar but I have problems with Pfam-A (is not found). I´m trying to download it but I can´t connect with the server (error 425 failed establish connection). Can you help me? …
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Hi everyone,
I'm very new to the BEAST community and tumbled across an issue.
Using IQtree's ModelFinder, I identified the best protein substitution models for a set of proteins I included in a phyl…
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Dear all
We have encountered the following error when running db_update on head node on an AWS EC2 instance with SLURM capability and working nodes also in EC2 instances.
```
Error in rule pfa…
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Hi,
I ran the command below and after some time I get the job completed with Pfam and work directory outputs. However, the tree and alignment are not being generated.
ezTree -list list_of_geno…