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Dear PoreC pipeline developer,
I'm having an issue at the rule create_hicRef and import_basecalls for the test dataset. It seems to suggest pyarrow issue.
Below is the log file from `results.test…
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The next unit should be a dead end filtration model. Here is the discussion how we would like to model this unit.
## Key properties of dead end filtration
- liquid is pressed (with pressure) th…
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I'm getting this error when trying to run uncalled4 4.1.0 on RNA data.
```
Auto-detected flowcell='FLO-MIN106' kit='SQK-RNA002'
/usr/include/c++/8/valarray:583: _Tp& st…
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Dear author,
hello ！I would like to know if autoHIC software will be compatible with porec data in the future?
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Hi,
I am trying to install it on HPC (PBSpro) but II got this error.
Followed "Developing the Snakemake pipeline"
1. Conda activated: tox and snakemake
2. git clone pore-c.git
3. cd pore-c
…
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Hi,
I run into an error in the virtual_digest rule.
Looks like Bio.Alphabet was dropped after biopython 1.78 but required by the rule.
Could you provide a fix for it?
```
Error in r…
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### Ask away!
The command I am using is：
nextflow run epi2me-labs/wf-pore-c -w ./work --fastq 10-Pore-C.fastq.gz --chunk_size 100 --cutter NlaIII --hi_c --mcool --mcool_resolutions '1000,5000,10000,…
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For everyone wondering,
the las step of creating the conda environment fails, beacuse the readme contains a typo:
it should be `conda activate pore-c-snakemake ` not `conda activate pore_c_snak…
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Hello
I created environment using “conda env create -f hic_env.yaml” and succeeded.
After that, I tried to run pairtools, but there was an error：
It says my numpy version is incompatible. If I u…
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### Ask away!
Hello,
I had a question about how a read is resolved into pairwise contacts before conversion into .hic.
For example, lets say we have a read with 5 fragments A,B,C,D,E.
I was und…