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Hello,
I am attempting to run Spaln but am getting a seg fault error. I got the error both with and without the -A1 flag. Here is the rest of the command I was running. I am running this on a clus…
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* **PTHR ID & PTN node:**
GO:0031623 | receptor internalization | IBA with P50570 , 727949 , 71096 , 2513 , PTN008520579
* **Sequences with problematic annotation (ID + gene/protein name):**…
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* **PTHR ID & PTN node:**
GO:0000122 | negative regulation of transcription by RNA polymerase II | IBA with PTN001098465 , S000004515 | GO_REF:0000033
* **Sequences with problematic annotation…
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Hi, I have a corpus of about 500,000 protein sequences and would like to apply them to existing models like this one for predicting the evolution of monoclonal antibody binding to an epitope.
How cou…
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* **PTHR ID & PTN node:**
GO:0006897 | endocytosis | IBA with PTN008520527 , 620416 , DDB_G0277851 , S000001709 , DDB_G0277849
* **Sequences with problematic annotation (ID + gene/protein name…
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At least in production, we currently include stop codons (`*`) at the end of our protein sequences. I think to me this feels quite unexpected. NCBI doesn't seem to do it: https://www.ncbi.nlm.nih.gov/…
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Hi,
I'm trying to replicate analysis completed back in 2013 using an older version of Hyphy. The analysis I'd like to run would includes estimating distances for Fst using an ML approach under a G…
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python3 /data/bio-software/egapx/ui/egapx.py ../data/input_D_farinae_small.local5.yaml -e docker -o GCA_040085125.1_ASM4008512v1_out2 -w ./temp
[6f/72e38f] process > egapx:annot_proc_plane:gnomon_b…
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* **PTHR ID & PTN node:**
GO:0006105 | succinate metabolic process | IBA with FBgn0038437 , PTN000320077
* **Sequences with problematic annotation (ID + gene/protein name):**
https://www.po…
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Thank you for developing this model.
I found that in the dataset you are using, there are two numerical sequences under a protein sequence in the training set, while there is only one sequence in the…