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Although I can download most files in advance, it appears that some downloads are hardcoded into the source?
Specifically:
```
./ui/egapx.py: taxids_file = urlopen("
[https://ftp.ncbi.nlm.nih.g…
OH-AU updated
1 month ago
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Hello, I am using BRAKER for the first time to annotate the genome of a plant with an approximate genome of 3Gbp. I have RNA-seq data and a fasta file of proteins from a plant of the same species and …
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Is it possible to use proteins you have generated outside of VirClust?
If so what format/structure should they be?
Thanks
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is:issue is:open can we use cellphonedb for proteomic data analysis. i have relative abudance of proteins among different samples (cells from different tissues.
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Hi,
I am running DAS Tool on conda environment. Not able to figure out what is the issue and how to resolve.
I am getting this error:
DAS_Tool -i concoct_contigs2bin.tsv,maxbin_contigs2bin.tsv,m…
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Dear authors,
I wonder how you define and compute (Boolean variable) a hit to database, e.g., plasmid_proteins?
Thanks
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## Expected Behavior
Hi,
Thanks for developing this great tool for structural alignment. I got the results by searching my PDB files against PDB100 database with the following code `foldseek easy-se…
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Dear developer,
I'm curious if ezaai is also suitable for AAI calculations between eukaryotic proteins, please note that proteins and not genomes are entered here.
Looking forward your reply. Th…
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Explore integrating Alphafold cross-referencing and 3D structures of proteins not in PDB