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Hi,
Since we were discussing integration of Sage (https://github.com/compomics/searchgui/issues/334), I wrote an MzIdentML module to write results, since I wanted to play around with PeptideShaker …
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## User story
>As a website user
>I want to download a [Data Package](https://specs.frictionlessdata.io/data-package/) that provide me with a list of all files in the dataset
>So that I do **…
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As we discussed last week, we will need to have a different definition of errors or status when querying all entry points. The broker will need to retrieve multiple statuses for multiple entry points.…
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We should have a prototype of an SDRF definition for metabolomics data. EPMA will work with SDRF for the standard metadata for samples for proteomics and metabolomics, and in principle, the file forma…
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At least the proteomicsdb.org example in the Methods section of https://doi.org/10.1038/s41592-021-01184-6 is not working (both PDF and online version). See the screenshot below.
https://www.biorxiv.org/content/10.1101/622852v1.full
it would he…
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**Submitting author:** @ypriverol (Yasset Perez-Riverol)
**Repository:** https://github.com/PRIDE-Archive/pridepy
**Branch with paper.md** (empty if default branch): master
**Version:** v0.0.4
**Edito…
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We are using moFF on a larger dataset (27 label-free runs) and it takes a very long time (about 40h), even with setting for 16 threads and 150GB RAM.
Are there any parameter settings that can shor…
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## Category: Workflow Software (or new section?)
Name: If containers are used in the analysis, they should be referenced through stable version numbers
Category: "bronze"
Description: If containe…
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Hi! I'm trying to do the exercise in the textbook "R for Mass Spectrometry" (https://rformassspectrometry.github.io/book/sec-msintro.html), but am unable to access the demo dataset. I have Bioconducto…