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Hello Mikhail,
We upgraded our OS from CentOS7 to a fresh install of RedHat 9.4 on a new HDD, reinstalled miniconda, then installed flye into a new environment. Our assemblies crash in the consensus …
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Hi, I´m trying to use polyconvert to generate TAZ definition from a shapefile.
The shapefile was generate using EPSG:4326
I´m passing the network as parameter too, so polyconvert calculate de pr…
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### Is this a new bug in the Pinecone Python client?
- [X] I believe this is a new bug in the Pinecone Python Client
- [X] I have searched the existing issues, and I could not find an existing iss…
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Hi!
Can CHOP be used to do the actual read mapping, or does it just create a fasta file that I e.g will need to index with BWA and then map reads to? If so, I assume my final alignments will be rel…
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Present in nf-core multiqc report:
- fastqc metrics, including GC content
- mapping percentages (bowtie2)
- reads passing filters (cutadapt)
- trimmed sequence lengths (cutadapt)
- unique/multima…
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Hi Fritz,
I've first merged calls from Delly, Lumpy, and Manta for each sample, and then merged all samples into one VCF using SURVIVOR. I tried to run SURVIVOR stats to filter SVs with at least 5 …
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### Before reporting an issue
- [X] I have read and understood the above terms for submitting issues, and I understand that my issue may be closed without action if I do not follow them.
### Area
a…
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Hi,
I'm using HISAT2 to align ribosomal profiling reads (25-35nt) to a human reference. I'm getting a very large proportion of multi-mapping reads. On average, only ~7% of mapped reads were unique …
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## Description
I copied all index mappings 1:1 just renaming and making a new one using `opencti-reindex_` as a prefix. Once I did this I recreated new indexes for OpenCTI, I then queued a reindex …