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Why does a script for which the name suggests RNA run here? What's this tool do?
```
`python /sfs/qumulo/qhome/vpr9v/code/dnameth_pipelines/src/tools/bisulfiteReadFiltering_forRNA.py
```
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- https://github.com/ENCODE-DCC/rna-seq-pipeline
- https://www.genome.gov/sites/default/files/Multimedia/Slides/ENCODE2016-ResearchAppsUsers/ENCODE2016_strattan_slides.pdf
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Hi Prof. Xijin,
I am proposing to use iDEP for pathway analysis in a multi-omics model. We have RNA seq gene expression, DNA methylation and genetic variants SNPs data. I am wondering if I can use…
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Hello MerenLab,
While at EBAME I was encouraged to open this discussion by @FlorianTrigodet and @ivagljiva, and bring it to @semiller10's attention.
DNA methylation is on the verge of constituti…
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bwtool might be available on conda (if it's the same tool) - if you're interested.
https://anaconda.org/pwwang/bwtool
Thanks for your new contribution, we need tools to work on bigwig since it'…
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Following discussions amongst RNAcentral members (and specifically with Michelle Scott and Ruth Seal), we'd like to propose deleting the children of 'C_D_box_snoRNA' and 'H_ACA_box_snoRNA' (in the ncR…
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Hi.
I have three multi-omics datasets of RNA seq (vst normalization), DNA methylation (beta value) and plasma metabolomics.
I normalized my metabolite data with the total sum of all detected ions a…
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Hello Jared,
I'm new to Nanopolish but would like to use your software for detection of RNA's native structure, similar to SHAPE-map presented during London Calling 2019. Recently, generated two se…
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Analogous to recent RNA seq quote.
Want WGBS for 116 samples, sending DNA
sr320 updated
3 weeks ago
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Sorry I could not come for the seminar today. I have downloaded the data but could not push to the repo because of the large data size. Any way to upload data with a size (100-200MB) to Github?
For y…