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Hi,
I am interested in using long and short reads to assemble a transcriptome with RNA-Bloom2.
I had a few questions regarding pre-processing of reads before using RNA-Bloom2.
I am loosely fo…
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### Description of feature
This issue is to provide an overview of different tools and related sub-issues related to supporting multiple modalities:
- CITE-seq (=RNA+protein) (https://github.co…
grst updated
4 months ago
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Hii,
I read your current Research paper, it is a nice research "A comprehensive benchmark of RNA–RNA interaction prediction tools for all domains of life" I am going to develop an algorithm on RNA…
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RNAcocktail is a very impressive tool to process almost all kinds of analyses based on RNA-seq data. But the tools integrated in the RNAcocktail has not been updated for a long time. can you upgrade t…
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### Description of feature
Following up on https://github.com/nf-core/rnaseq/pull/1369#discussion_r1744079079.
@MatthiasZepper Please take over this issue.
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Hi, I am working with Nanopore direct-RNA sequencing and found your tools really useful. However, while I was trying to use your BamSlam script to generate some summaries and figures for the alignment…
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Hi Vg team,
I have a problem,I'm wondering if Vg tools can be used for variants(snp;indel;SV) call basing on bulk RNA sequencing. You known that the small variants can be detected based on RN…
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Hi,
I am trying to run celescope. I built the reference genome and I have created the shell scripts, but I obtain this error:
sh Bnsortednuclei1.sh
2024-05-14 14:13:14,148 - celescope.tools.…
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Seurat and SeuratObject 5.0.1 installed from CRAN.
Attempting to merge SeuratObjects with "collapse=TRUE" results in error "Collapsing layers is not yet supported". I can see also in the current GitH…
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When run the tutorial "https://greenleaflab.github.io/ArchR_2020/Ex-Analyze-Multiome.html"
```{r}
#Add Clusters
proj