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Hi Alex,
I have a question about best practices for dealing with multi-mapping reads in scRNA-seq data analysis, particularly when looking at transposable elements (TEs). Due to the nature of TEs,…
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Hi!
Our scRNA-seq data was processed using the Seurat package. In order to run scDRS with our scRNA-seq data, I first converted the Seurat object saved as an RDS file to an h5ad file using the foll…
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Hello DcjComm developers,
First, thank you for your excellent work on the DcjComm package!
I am currently working on a project using Seurat to analyze single-cell RNA-seq data, and I would like …
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# Contribution Guidelines
1. **Initial Setup**
- Clone the repository: `git clone `
2. **Update Local Content**
- Ensure you’re up to date with the development branch:
```bash
git ch…
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Hello,
I really enjoyed your paper (great method!), and I am applying spaCET for deconvolution of a lung cancer ST Visium data set. For validation, I would like to know how to find the marker genes …
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Hello
Thank you for developing this great and wel document package.
Wondering if `EnrichmentBrowser` can use scRNA-seq data input? If so, how would you recommend doing this? I am especially wo…
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Hello. Does this work for scRNA-seq data? What are the changes that can be made to make it working in scRNA-seq data if it is possible?
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Do you have a vignette tutorial code on how to use cTRAP on Seurat or scRNA-seq data please? Thank you!
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Hi Cytospace team!
I have encountered some problems where the code stuck at this correlation = (v2.T.dot(v1) - sums / n) / stds / n, staying there for over 24 hours. Another issue is the concurrent…
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Hi! I noticed that all the data in your article is the full-length scRNA-seq，I wonder whether can RSEA be applied on 10x data? Thank you for your atthention!