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we may want a way to support sequences of operations. for example, could we come up with an elegant way of supporting something like:
- reduce data to n1 dimensions using algorithm 1
- align data…
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I'm encountering an issue where certain identified regions from the Phaster analysis of my sequence (available at https://phaster.ca/submissions/NC_019418) are not appearing in the output, despite bei…
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### Description of feature
While not necessarily required, these can fit some recommended protocols by vendors like KAPA, (cf. "KAPA Bioinformatics Analysis for Longitudinal Detection of Circulating …
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Hello! I am really looking forward to using your tool which seems very useful.
I am encountering an error for which I cannot seem to find a solution. I am trying to get orthologous exons between huma…
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Hi,
First of all, thanks for your amazing work!
I want AFDB clusters to do some analysis, the fields I need are the REPRESENTATIVE FASTA sequence, and the CLUSTER SIZE, it would be nice to hav…
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Will you be able to extract the sequence window more flexibly? Could you get the predicted phosphosite in the middle of the window, so we can get the sequence of both the N and C terminus sides? I am …
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Hello,
I was recently running analyses on a dataset containing ~27,000 sequences (~30,000 sites). In the analysis, 306 were noted to be identical to another sequence in the dataset and would be "i…
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Hello TensorRT-LLM experts!
I have a question regarding the weird operation of the XQA kernel function supported in NVIDIA's official MLPerf 4.0 version of TensorRT-LLM.
First of all, I want to te…
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The viruses identified by genomad weren't annotated as virus sequence by VIBRANT?
Hi,
when I input the virus sequences identified by genomad to identify AMG genes by VIBRANT(1.2.1), there wasn't any…
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I'm currently using the 'argmax_time_courses' function in my project, which appears to take an argmax at each time point instead of computing the most probable sequence of states (like the Viterbi a…