-
## patch-seq assay
Label: patch-seq assay
Alternative term(s): patch clamp and RNA sequencing assay
Definition: A single-cell RNA sequencing assay that takes a patch clamp recording from a cell a…
-
Hi, Ricard @rargelaguet
I am reproducing Extended Data Fig. 6a of the article "Multi-omics profiling of mouse gastrulation at single-cell resolution" . I have currently downloaded Supplementary Table…
-
Hi,
Thank you for your great tools for single cell multi-omics analysis. I successfully ran the cite-seq demo but failed to ran our scRNA+scATAC data with following error report:
The input …
-
As outlined in [A field guide for the compositional analysis of any-omics data](https://academic.oup.com/gigascience/article/8/9/giz107/5572529) CoDa should be the way to do single-cell RNA seq.
I…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/SydneyBioX/SpatialFeatures
Confirm the following …
-
Hello,
It is a question not related to git but most to the algorithm of MSNE.
You mention that MSNE is not comparing the edge weights between different networks, but this is important no?
What is…
-
Hi developers,
Nice method and code/documentation! I was wondering how feasible is to apply ANANSE to single-cell multiomics data (RNA+ATAC):
- For scalability, should I pseudobulk cells by cell…
-
### Ask away!
The pipeline has run successfully using `--kit 'visium:v1'` with `2.2.0` The output generated are as follows
```
config_stats.json
gene.expression.mito-per-cell.tsv
gene.expressi…
-
hi,
I am running unioncom on integrate two datasets one with 5k cells and one with 50k cells. I gave the full feature matrix and it was going slowly, so I decided to reduce the dimensionality to 10 a…
-
Hi Authors of scMMO-atlas,
Thank you for your awesome work, and this is indeed a very useful database. But I am wondering if your database has any overlap with ENCODE project? Thank you very much!
…