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Write a script to apply the user's filter selections to an annotated VCF.
Input parameters:
- _Filters_: command-line arguments describing the user's filter selections, e.g. "filters=clinsig:patho…
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Hi,
I ran into some problems when predicted mutation effect using ExPecto, which are listed as follows:
1) in my input file *.vcf, whether I should restrict mutations within transcriptional regulat…
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**Reported by cmungall on 2008-01-29 00:45 UTC**
in general a class should have zero, two or more subtypes.
eg
single_is_a_child SO:0000872-trans_spliced_mRNA SO:0000479-trans_spliced_transcript
…
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i have noticed in that in the reports files, if there is a base N in the gene feature sequences, it translates to amino acid X.
I was wondering if there is a way to handle those base Ns. is there a …
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Here is a list of aligners that are made for long reads, add yours and see if we can come up with a unified way to use them?
https://github.com/ocxtal/minialign
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# Summary
The stapling architecture will consist of the following workflow:
1. Use scaffold (represented as `LatticeRoute`) to form multi-dimensional array representation of the scaffold (`StapleB…
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## Tasks
1. all PCGs BLAST all-vs-all search - diamond.py
2. gene sets construction
3. real alignments to respective sample contigs specific to gene coordinates
4. module detection of coverage-c…
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![image](https://user-images.githubusercontent.com/3852020/99812860-debfa380-2b3e-11eb-84b3-36029899d115.png)
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### Background
Following Variation Set discussions at the Boston Plenary, it was decided that VR will only provide a model for **static** Variation Sets - as simple objects holding just an enumerated…
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cc: @lpantano @gurgese @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC @sinanugur @Bastami @haebhardt
Let's discuss `Variant` attribute that will give the informatio…