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I created a merged bed file and tried to make absolutely sure the file did not include any multiallelic sites:
```
(nadmenv) seetaraj@a02-01:/scratch1/seetaraj/BCSB_GDA/ORIEN_MOONSHOT_ANCESTRY/moo…
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Hi,
I was trying to demultiplex 20k cells to 4 donors. But only a few cells were assigned to each donor. each donor was genotyped using Infinium Omni2.5Exome-8 v1.5.
The vcf file looks like th…
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I as wondering if AsmVar does "joint genotyping" of multiple samples, analogous to what GATK does for SNPs?
Does AsmVar do break-point resolution? For example, if I have a population samples with s…
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I am using `pandora map` to align the reads against the pangenome reference and call out the variants using the `--genotype` option. I ran the pandora map command using the default (ML path-oriented (…
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Thanks for making an awesome package!
Is there currently a way to specify a different prior for each SNP in `multidog`? I didn't see it in the documentation, but wanted to ask before I attempted to…
gtbil updated
11 months ago
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Good day,
We are about to start using souporcell as the main tool to demux our single cell data, for which we also have genotyping information.
It turns out that using --commonvariants provides bett…
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I as wondering if svtyper does "joint genotyping" of multiple samples, analogous to what GATK does for SNPs?
Does svtyper do break-point resolution? For example, if I have a population samples with…
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In the future, I want to map the resequencing data of different species of onto my map genome.Then the group vcf with good classification is used to carry out the process of vgmpmap
I wonder if this …
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Hi, thanks for this nice tool!
I wanted to understand the usage of CORE-ATAC conceptually. So, for creating training-set peaks, we will need peaks regions identified from bulk-ATAC-seq? I have scATAC…
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Dear dev community,
Would you consider building a container for [PennCNV tool](http://penncnv.openbioinformatics.org/en/latest/)?
Briefly, it is a free software tool for Copy Number Variation (CNV…