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Hi all,
Few requests:
1-It is unclear where the final merfish and snRNAseq datasets are on AWS; no README is supplied, and there are several folders with no description.
2-The repository is a me…
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Hello!
I recently started using pySCENIC for my mouse snRNAseq data and have a question regarding the input requirements for the cisTarget databases used to prune indirect targets. Should I include…
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Hello, a very good tool. But I reported an error when I ran the command.
The following are my command:
nohup /usr/local/bin/singularity exec \
--cleanenv /data1/xliu/snRNAseq_Trip4_lung/cellranger/…
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Hi, thanks for a great package! I am working with a brain snRNAseq dataset and have run scDRS to test for the enrichment of MDD, ADHD, ALZ, MS, SCZ, and height GWAS hits (using the MAGMA scores from y…
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Hi!
I am trying to map my snRNAseq data to Hypomap, but when I run either `predict_query ` or `map_new_seurat_hypoMap`, I got the following error message:
```
Normalizing data
Matrix for annda…
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Hello,
Your approach looks very interesting! And I hope your pre-print will get accepted.
I would like to run xfuse on GPU cluster using one dataset from Visium. Few questions:
- does one need t…
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Could you please give me a link to download 30 full size images or at least high resolution?
Thanks a lot! I cant connect to globus.
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Hi
I am trying out `CellBender` for the first time, and I'm excited to see how it affects the clustering in our single nuclei RNAseq data.
One thing I would like to include, but couldn't find a …
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Create an endpoint to generate the csv needed by the data sankey diagram. Diagram [here](https://software.docs.hubmapconsortium.org/data-sankey/index.html) example csv [here](https://github.com/hubm…
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Hello,
I am trying to run scvelo in snRNAseq. I used kb-python to prepare the counts from my fastq data. I generated an index using—-workflow nucleus, and I ran kb count with that workflow, too.
T…