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When fagin loading synteny map, an error occurred as below:
```
Get synteny map file from config
N197> "function (.)
{
con@input@syn[[target]]
}"
[1] "GlymaLeeGm01_glyma.Wm82.V4.4P…
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Apply transmap to 5 species alignment and apple grimm synteny to the result of gene mapping
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I was able to install the package/visualize the sample data correctly, however the dual synteny plotter is hitting an error with my custom data. I can visualize my ideogram file alone, which makes me …
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I used maf2synteny to extract synteny blocks from Cactus alignement of five genomes with a maximum divergence time between genomes 3 mya. So I expected to see extended blocks of synteny (hundreds of k…
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Currently the red (plus yellow/blue for insertion/deletion) are hardcoded in the LinearSyntenyRendering
Add ability to use custom methods
From pairing with @garrettjstevens
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First off, thank you for the fantastic tool @jtlovell!
I noticed that there are some old issues (#121 and #127) where folks were interested in highlighting a single gene or small region. I have enc…
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Greetings, I'm trying to make use of MCScanX_h, i've prepared the necessaries files following the manual yet my data neither example data is working.
My gff with 5 species gff is edited follwing t…
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We had recent bioinformatics group meeting and it became apparent that there may be some missing functionality in `roary` with respect to its use of synteny and its treatment of paralogs.
The situa…
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Hi, @thackl
Can `gggenomes` use the Bézier curve for synteny block ? Like the sankey plot https://github.com/davidsjoberg/ggsankey
![image](https://user-images.githubusercontent.com/20680150/1478…
baozg updated
2 years ago