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We have Chromista in our taxon name cache:
```
isb_2=> select distinct kingdom from taxonomyname;
kingdom
----------------
Archaea
Bacteria
Viruses
incertae sedis
Fungi
Chro…
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Hi,
I have run geNomad and it seemed to run smoothly until it aborted due to uncaught exception (see below).
libc++abi: terminating due to uncaught exception of type Xbyak::Error: x2APIC is not …
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The 'hybrid' mode was used in the test, so taxonomic assignments were used as bin ids.
But I can not imagine how that could cause negative values.
Example results for ari: -0.24 and -2.29
All results …
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Hello all,
I have a blastn file conatining 16s blastn results, and almost half of them are classified by Kona as "unassigned" while it's clear they should be assigned. Now, that file contains seve…
ghost updated
7 years ago
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## Expected Behavior
Run mmseqs databases to create a taxonomic database that uses recent data from uniref, e.g uniref100
## Current Behavior
A recent downloaded uniref100 fasta file has 342650…
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Redesign of the metagenome / sepsis report interface in the Vue app.
* add tabs for: read assignments, metagenome assembly, viral detection, genotypes and controls
* keep taxonomic read assignment…
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Munch et al. (Syst Bio 2008) assign taxonomies to sequences with the BLAST+tree method, which produces not only a best-guess taxonomic assignment but also a posterior probability for each taxonomic le…
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During our community workshops, paleobotanists brought up the importance of considering uncertainty in data and interpretations. At our Senior Personnel Meeting in June 2022, we brought up the idea o…
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# Check that:
- ... all stocks in Mike's management table are in the final analysis
- ... all stocks listed as un-assessed are not just missing
- ... region assignments make sense
- ...habitat assignm…
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Hi phyloFlash team, thanks for developing this awesome tool!
My question is related to the taxonomy assignment of NTU for Eukaryotic sequences. I know that Eukaryote has much more taxonomic ranks t…