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I am mapping telomere containing reads in which the reference may have a large indel right at junction of telomere and non-telomere sequence and the reads are getting hard clipped but I want them to g…
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Summarizing an email chain as an issue to allow for open discussion of the topic.
Mutations in telomeres and centromeres can lead to misleading results. So it makes sense to remove the trees from …
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Hello,
I was wondering if new sequencing artefacts beyond what was described in the Genome Biology paper have been discovered now that Guppy has undergone several iterations since the version used …
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"We mapped reads to the pangenome to efficiently capture telomere length across the diverse
population. A references file of 500kb of subtelomere sequences was assembled from each of the
genomes (…
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Hi @lilit-nersisyan
Output from the testrun shows for me the avg. len as: 10683320 bp is this ok?
BW,
Bart
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Hi,
Firstly, I want to thank you for this amazing tool! I've been using it consistently during my PhD, and it has been immensely helpful!
I have a few questions about the circularization check…
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### Description of feature
Add the HOSTILE tool for host decontamination
https://www.biorxiv.org/content/10.1101/2023.07.04.547735v1
https://github.com/bede/hostile
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Can you provide centromere and telomere data for hg19? or the way to generate these data?
Thanks!
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This morning I lost power while working on tasaki.birc.emory.edu (12C-138 iMac to left of telomere). Keith doesn't want to load telomere's UPS w/ a second iMac, and asked me to submit this request for…
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# R, 20140828:
Telomere, currently acting as our OSIRIX DICOM receiver, locked up hard at 4:02 am local time (logs pasted below). Keith had to physically turn it back on around 1:30 that afternoon.
…