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* We should upload performance data from CI runs to a central storage so we can compare runs against each other
* It'd be nice, but not MVP to be able to query and see changes to performance over tim…
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Hi Andre and the Bambu team,
I am encountering an issue related to issue #444 . I merged read classes across 44 samples as you had suggested and found that there were about 1000 novel transcript is…
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To use the demo corpus on other computers and especially on linux, the absolute media paths should be relative and "EXMARaLDA-Demokorpus" should be changed to "EXMARaLDA-DemoKorpus" like the folder n…
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Need to curate some alternative transcript examples for Chado loading
can do some from the gene expression list:
gene expression, alternative splicing (3)
gene expression, alternative transcri…
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This call
```
protein_meta = pms.annotate(POLR1A_protein_id)
````
leads to this error
```
{
"name": "ValueError",
"message": "A required `transcripts` field is missing in the response fro…
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**Describe the bug**
Not sure if it is a standard behaviour, but I am trying to add missing information (e.g transcript, exon or gene) to my GTF file.
Using: `agat_convert_sp_gxf2gxf.pl --gtf $INGTF…
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Change gene.iobio to show variants and depth (from alignments) for genes on alternate contigs.
For example, gene GSTT1 for build GRCh38 (RefSeq transcripts), the app is not able to display variants…
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Hi,
First, I want to express my appreciation for the IsoQuant tool; it has been incredibly helpful and has saved me a lot of time.
I have a question regarding the GTF file generated by IsoQuant.…
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Now that we've got about 100k transcripts in our oral argument collection, perhaps a next step would be to add sentiment analysis. I think this is pretty easy stuff these days either through an AI cal…
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The current GRCh38 RefSeq annotation (GCF_000001405.40-RS_2023_10) has [368 transcripts for BRCA1](https://www.ncbi.nlm.nih.gov/datasets/gene/id/672/products/) - up from 6 the previous version.
I c…