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Hi Weilong,
Thanks for putting BSseeker2 up, this is a just wonderful tool!
Comparing the BAM files generated by BSseeker2 starting from paired-end reads, with the ones generated with another prog…
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Hi,
I found that there are always too many LTRs no matter what sequences I provided.
For example,
1) helitronscanner(https://sourceforge.net/projects/helitronscanner/) results as input,
![imag…
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Hi,
first of all, I really like using Salmon for RNAseq quantification. I have a very special problem. We are working with experimental conditions in which transposons get activated and highly expr…
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Hi,
Thank you for creating a great platform to examine the CRISPR-Cas transposon systems bioinformatically!
I was able to follow along the tutorial to find CRISPR and Cas proteins in the genome o…
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Hi
I'm having problems to complete the first stage ('detection'). The code terminates with an exception.
A bit of info to help you diagnose the issue.
My command is as follows
```
python /r…
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Hi,
I recently tried eggnog-mapper website to annotate my bacterial genome for COG analysis. From the resulting output I was using the column of COG_categories to calculate the number of genes annota…
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- Use FBte IDs from list generated in issue https://github.com/cbergman/transposons/issues/13
- Note: there are Symbol Synonyms and Name Synonyms
- Note: there are redundant synonyms for both symbols …
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The tool developed by the author is very good, but the software has not been updated for a long time, and the database is also the same. Could the author provide some scripts for building the database…
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```
-f/--families Repeat element/transposon categories to be used. These must be exact string match's to start of read name and are used to split reads into categories for analysis. Not specifying …
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Dear Kevin,
Greetings!
In the follwoing environment;
conda activate transposon_annotation_reasonaTE
reasonaTE -mode pipeline -projectFolder workspace -projectName testProject
I got the follo…