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wilkelab
/
Opfi
A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
https://opfi.readthedocs.io/
MIT License
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5
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adding transposon gene location in operon_analyzer
#213
Jigyasa3
opened
1 year ago
2
Release 0.1.2
#212
alexismhill3
closed
3 years ago
0
Add JOSS editor revisions to Opfi paper
#211
alexismhill3
closed
3 years ago
0
Add reference for Bioconda
#210
alexismhill3
closed
3 years ago
0
Paper review
#209
alexismhill3
closed
3 years ago
0
Remove modified PILER-CR source code
#208
alexismhill3
closed
3 years ago
0
Make Opfi available on Bioconda
#207
alexismhill3
closed
3 years ago
0
Import style
#206
afrubin
opened
3 years ago
0
"Operons"
#205
afrubin
opened
3 years ago
0
Flatten `tutorials/` into a single-level directory
#204
alexismhill3
closed
3 years ago
1
Tutorial example 1 crashes
#203
Thomieh73
closed
3 years ago
0
Installation using a conda environment
#202
Thomieh73
closed
3 years ago
0
Documentation for optional dependencies
#201
afrubin
closed
3 years ago
1
Installation in docs vs. README
#200
afrubin
closed
3 years ago
0
Platform requirements
#199
afrubin
closed
3 years ago
0
PILER-CR requirement
#198
afrubin
closed
3 years ago
0
Release 0.1.0
#197
alexismhill3
closed
3 years ago
0
fix inaccurate description of pytest usage
#196
alexismhill3
closed
3 years ago
0
Paper
#195
alexismhill3
closed
3 years ago
0
Paper
#194
alexismhill3
closed
3 years ago
0
Opfi documentation site
#193
alexismhill3
closed
3 years ago
0
Bump pyyaml from 5.3.1 to 5.4
#192
dependabot[bot]
closed
3 years ago
0
Contributing guide
#191
alexismhill3
closed
3 years ago
0
Clean up project root directory and add a tutorial for Opfi
#190
alexismhill3
closed
3 years ago
0
update third operon_analyzer example
#189
jimrybarski
closed
3 years ago
0
Make strand an optional value so that CRISPR arrays and other feature…
#188
jimrybarski
closed
3 years ago
0
Allow more information about genes to be displayed in gene diagrams
#187
jimrybarski
closed
3 years ago
0
Update readme
#186
alexismhill3
closed
3 years ago
0
Gene finder cleanup
#185
alexismhill3
closed
3 years ago
0
Refactor plotting function
#184
jimrybarski
closed
3 years ago
1
Add spacer position, don't allow spacers to target themselves
#183
jimrybarski
closed
3 years ago
0
Deduplicate supersets
#182
jimrybarski
closed
3 years ago
0
Prevent temp file from being created in source directory
#181
jimrybarski
closed
3 years ago
1
Add maximum size rule
#180
jimrybarski
closed
3 years ago
0
Use correct substitution matrix
#179
jimrybarski
closed
3 years ago
0
Document which array targets a CRISPR target
#178
jimrybarski
closed
3 years ago
0
Fix newline error in as_str
#177
jimrybarski
closed
3 years ago
0
Fix invalid import
#176
jimrybarski
closed
3 years ago
0
Nicer summary API
#175
jimrybarski
closed
3 years ago
0
Remove the newline after serializing an operon
#174
jimrybarski
closed
3 years ago
0
Fix sts
#173
jimrybarski
closed
3 years ago
0
Allow ignoring of features to persist when serialized
#172
jimrybarski
closed
3 years ago
1
Repeat finder
#171
jimrybarski
closed
3 years ago
0
Allow user to set path to BLAST
#170
jimrybarski
closed
3 years ago
0
Don't give a direction to CRISPR arrays
#169
jimrybarski
closed
3 years ago
0
Add rule to apply minimum length to genes.
#168
jimrybarski
closed
4 years ago
0
Fix feature length
#167
jimrybarski
closed
4 years ago
0
Serialize operons
#166
jimrybarski
closed
4 years ago
0
Consistent indices
#165
jimrybarski
closed
4 years ago
0
Self targeting spacer search
#164
jimrybarski
closed
4 years ago
2
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