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### Describe the bug
after syncing a newly created contact to my android phone, the phone numbers are missing.
### Steps to reproduce
* on a linux machine i create a new contact using khard. …
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Use https://github.com/mskcc/variant-overlap or some other tool to add sample variant overlap metrics to the sample comparison workflows & output metrics, variants, and/or reports so that we can direc…
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Dear LUSH team,
Thank you for creating this much-needed faster implementation for variant calling.
I wanted to validate the accuracy of the vcf generated by LUSH-DNAseq-pipeline using Haplotype…
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Hi,
I am trying to run truvari on the hapdiff unphased variants VCF (produced by the haplotype resolved HG002 assemblies) against the HG002 benchmarking VCF. I have given the commands used and the …
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Hello @PhHermann
First of all thank you for this great package.
I am attempting to run LDJump using a vcf file that contains missing data.
vcfR introduces NAs instead of Ns for missing sites, hen…
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This recommendation was raised in the [review of the Poseidon paper](https://elifesciences.org/reviewed-preprints/98317v1/reviews#tab-content#tab-content).
> I could not find any discussion of refe…
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We have been referring to this link from various websites, documents, grant proposals, etc. I would urge to include a couple of sentences to describe what this tool does right at the top until you guy…
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I ran VarScan2 on my paired pileup files, and I do not think there are problems with the input files (please see attached a part of the input files), but I really do not understand why it gave me outp…
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Dear all,
I would like to use preliminary reference SV calls from GIAB to benchmark some SV calling tools.
For _NA24385_ sample I am planning to use GIAB VCF file [ftp://ftp-trace.ncbi.nlm.nih.gov/g…
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Hello!
I have obtained three graph pan-genomes through three software: Minigraph, Minigraph_cactus and Pggb, which contain 12 mammalian species. Then I also have nearly 500 next-generation sequencing…