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I have all of the links in email. This is a great resource for testing new methods.
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**Submitting author:** @jinfinance (Rong Jin)
**Repository:** https://github.com/ncezid-biome/HMAS-QC-Pipeline2
**Branch with paper.md** (empty if default branch): sample_base
**Version:** v1.1.0
**Ed…
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### Operating System
Other Linux (please specify below)
### Other Linux
RedHat 7.9 (Maipo)
### Workflow Version
v2.9.0-gd9e8593
### Workflow Execution
Command line
### EPI2ME V…
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Dear Clair3 dev team,
## Background
I am using Clair3 for SNV/indel detection from ONT sequence data. The sequence data is from an amplicon sequencing experiment (high read coverage) of a mixed SA…
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Hello,
I am using Clair3 for variant calling on amplicon sequencing data from a minION, generally with a fair amount of success. However, for one particular amplicon, I get a large number of false ne…
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### Ask away!
Hi Julien,
Ive attached a copy of the report. Again we are using the unzipped files from the fasta_pass folder, included all of our reference sequences in 1 file, and have tried low…
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Hi,
I recently learned for `taxa` and `taxize` and have been exploring them a bit today, as I am trying to merge microscopy data with an metabarcoding data so that I can compare what is observed by m…
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Hi @RTRichar,
Thank you for developing MetaCurator. I am using MetaCurator to build a reference database on ITS1, and I have a couple of questions.
1. First, I am unsure about the selection of r…
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I am creating a workflow that has many steps that use different tools, and I'm creating [minimal Docker images](https://github.com/Niema-Docker) for each of the tools. I was wondering which of the fol…
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Hi,
I have a question about potential filtering steps for the decoil output.
I used Decoil on a sample and found 43 ecDNA, which was more than I was expecting. I have also used coral on the same…