-
At the moment, organ_part can only hold a child term of UBERON:0000465. We have come across a couple of scenarios where it would be more useful to specify a cell type rather than an organ sub-part. In…
-
1) Font & size need to be consistent throughout. I'm pretty sure that the text that says "Brain Lower Grade Glioma (TCGA, Provisional)" and "Glioblastoma Multiforme (TCGA, Provisional)" is larger than…
-
I recommend shadowing NCIT for neoplasm classification. These should be merged (the 2nd is undefined, I assume this is just a mistake rather than a deliberate attempt to make two distinct terms
```…
-
__UPDATE: IGNORE THIS WRONG TRACKER__
I recommend shadowing NCIT for neoplasm classification. These should be merged (the 2nd is undefined, I assume this is just a mistake rather than a deliberate …
-
If we are to take NCIT as canonical for neoplasms then we must change
```
is_a HP:0009733 ! Glioma
is_a HP:0009592 ! Astrocytoma
is_a HP:0100843 ! Glioblastoma ***
`…
-
Hi, all.
I'm only emailing this to the three of you since you directly deal with TCGA annotation data (plus, I don't want to raise panic in others). This only refers to TCGA pancancer atlas and Treeh…
-
## http://purl.obolibrary.org/obo/NCIT_C6958
- **Pr(G)**=0.41212121212121205 CONFIDENCE=0.3333333333333328 Success:true
- **SIZE**=3 (1 new axioms)
[img](target/img-NCIT_C6958.png)
- MEMBER: NCIT_C…
-
There was a small hiccup. The portion IDs for some of the multisector TCGA and Samsung samples inherited the same number even though there were in fact from multiple portions.
Some examples includ…
-
For a new data set how do you make ref in data(ref) ?
-
NCIT appears to formally treat astrocytes and GBM as distinct, with an astrocytic tumor unifying them.
To the casual user of NCIT the difference of these may not be apparent. Many other resources -…