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New tool:
https://www.biorxiv.org/content/10.1101/2019.12.17.864991v1
tldr;
* same accuracy then pilon/racon
* ... but much faster
Idea: we could add a rule for POLCA and compare the outcome.…
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Trying to run instagraal (version 0.1.2) yielded the following issue:
```
genome="Avaga.Masurca_A1.fasta"
hicstuff_indir="Adineta_vaga.Masurca_A1.Hi-C_reads"
outdir="Adineta_vaga.Masurca_A1.Hi-C…
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Greetings of the season.
I ran RaGoo on a Masurca assembly of short reads data with a chromosomal-scale reference genome.
I got this error
Thu Jan 23 09:53:29 2020 --- Reading alignments
Thu…
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Hello!
I ve been running Redundans in the past several times with no problem (with the only difference of using --noscaffolding), but suddenly now I get an error (even if I add noscaffolding parame…
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Hello,
I got his result from the test data for Illumina+Pacbio
N50 742371
Sequence 12310514
Average 586215
E-size 799397
Count 21
Is it something that is expected? N50 of over 650Mbp mention…
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Hello TGS-GapCloser team,
Thanks for developing this pipeline.
I'm currently using this tool to close the gaps in my scaffolds which are generated after Bionano hybrid scaffolding. I used my pre-a…
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masurca 3.2.5 writes 'CA8/Linux-amd64/bin' in assemble.sh for starting the CA run, but the install path is actually just 'CA/Linux-amd64/bin'
this is the error:
`[Mon Mar 5 09:45:54 CST 2018] Using…
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Hi,
I have produced a draft genome assembly of ~1Gbp plant genome with MaSuRCA based on Illumina paired-end reads and I additionally have ~50X 10x Genomics data which I wanted to use to scaffold th…
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Hello.
I am having a very weird issue, and I din't find any previous ``Mhap precompute jobs failed`` following this pattern.
Canu version:
```
dcf1007@DESKTOP-TDV8F7E:/mnt/d$ ./canu-2.0/Linux-…
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Dear developers,
I am running BRAKER 2.1.2 on a plant genome with around 40K scaffolds. But the job is dying at some stage with GeneMark. GeneMark dies with the following error reported to the STDE…