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Hello Everyone,
We are running Canu (version 1.8) using a hybrid of PacBio Sequel+RSII and Nanopore reads using a cluster with slurm as workflow manager.
The CANU command that I use is
```
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Dear all
I am using canu-1.8, I guess the most updated version of canu. After a few hours of running, I got the error message bellow.
I used this command line:
```
/home/vinatzerlab/Software/canu-…
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2019-04-11 15:40:56,629 NanoPlot 1.18.2 started with arguments Namespace(N50=False, alength=False, bam=None, barcoded=False, color='#4CB391', cram=None, downsample=None, dpi=100, drop_outliers=False, …
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Could you specify the nanopore version used for the input ecoli reads mentioned here? Is there latest MinION simulated reads with you, if so could you please share?
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Hi, we generated PCR amplified cDNA of our gene of interest and sequenced it on MinION, obtaining more than 10,000 x coverage of the transcript. We use these reads for phased analysis of alternative s…
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Hi,
I installed the last version of canu on an HP workstation with Ubuntu 18.04 and run this command on minion reads.
`/home/hal9000/soft/canu-1.8/Linux-amd64/bin/canu -p Hepa -d Hepa genomeSize=…
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Hi there,
I'm trying to install Flappie on an environment without root, using Conda to install the dependencies. When I try to compile Flappie, it throws the error that it can't find `cblas.h`. Thi…
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Irrespective of the nanopore chemistry, will Nanosim be able to model the error profile for a given MinION read?
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Dear maintainers,
I am thrilled to have found a program that clusters Oxford Nanopore reads, but I've encountered a bug. When I run `CARNAC-LR` on a small file, it runs fine, but when I run it on a…
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Hi!
We recently started sequencing on a GridION. Unfortunately, the fast5 files that end up in the /data/basecalled/ directory after live basecalling with guppy v.1.8.5 (under control of dogfish v0…