-
The current and recent releases are only on PyPI as source code release tar-balls, e.g.:
https://pypi.org/project/biom-format/2.1.12/#files
This made ``pip install biom-format`` considerably slo…
-
Thank you for your interest in submitting your lesson for review in The Carpentries Lab!
Please respond to the prompts below to complete your submission.
Check boxes by adding an 'x' between the squ…
-
Hello,
on OS X Ventura the installation throws error
ModuleNotFoundError: No module named 'numpy'
even though it is already install
this was tried for all versions of qiime2, both with and wi…
-
Refering to this [picrust2 issue](https://github.com/picrust/picrust2/issues/287#issuecomment-1319788419) I'm wandering if biom-format `osx-arm64 build` will be released soon or, if there's something…
-
Hi there. I am not sure how to convert my taxonomic profile into the CAMI Bioboxes Format. Suppose I run 2 different tools for taxonomic binning and convert the results into a simple OTU Table. Am I s…
-
Hi,
Thanks for your work on biom-format.
While running tests on the latest version(2.1.10) of corresponding package, two tests are failing with:
```
=================================== FAILURE…
-
### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem description
I'm getting the following error message when trying to parse MetaPhlAn4's outputs wi…
-
I open this issue because I now encountered several times that conda cannot resolve an `environment.yml` file that I created some time ago (see the example below).
I found that a bit disappointing…
grst updated
7 months ago
-
Hi
I am trying to create BIOM files having som data in `observation/group-metadata`.
In the [2.1 specification](https://biom-format.org/documentation/format_versions/biom-2.1.html), there is a des…
-
For interoperability it might help to offer BIOM format export (v1 uses JSON, or v2 using HDF5), probably most easily done via the format's official Python library https://github.com/biocore/biom-form…