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Thank you so much for designing this wonderful program. For the Cell Type Specific Differential Expression (CTS-DE) Analysis could you please offer more context for setting this up after normalizing t…
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During the differential privacy type checking we currently generate proof obligations of
numerical constraints, which are output into the resulting Dafny file. We experienced that Dafny has trouble w…
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Hello,
thank you for a really useful tool! I wanted to do a comparison and between my two conditions.
I am using the part your vignette: Identify dysfunctional signaling by using differential expr…
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Hi thank you for developing this great tool! I was wondering if you could provide details on the type of data used for the expression matrices. I see that it appears to be in log form, does the algori…
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Hi!
I've noticed that the function `rank_genes_groups` calculate logFC differently than seurat.
https://github.com/theislab/scanpy/blob/5800db45dde0c2060ad0a9bed8ea931bd41da936/scanpy/tools/_rank_g…
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I have successfully run Telescope on ~500 samples with a report produced for each sample. These have varying levels of ERVs reported in the report. Some ERVs have final counts of 0s and I am assuming …
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I got this error while starting to run this pipeline, any ideas how to fix?
AttributeError in line 6 of /home/data/Megan/nanopore/pipeline-transcriptome-de/Snakefile:
'Workflow' object has no attr…
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Hi,
I want to making a signature matrix using isolated cells, where the isolated cells have been sequenced using the bulk approach instead of the single-cell approach.
I am going to use sample 1-…
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Hi @matthiaskoenig,
Could you please let me know if we can view the differential equations in the report that is generated via SBML4HUMANS?
I could view the fluxes in the report but not the differ…
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