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hi ,
Thanks for hifiasm development. Now,I used hifiasm v0.19.5 version to assemble a 18Gb genome, used 23X HiFi data, the RAM of our compute resource is 3Tb. The asm.ec.bin、asm.ovlp.reverse.bin …
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Sorry to disturbing you. I used the Hifiasm-0.19.6-r595 version to assemble a huge genome more than 20Gb. However, when I add Hi-C data to do the phased assembly. I cannot get the haplotype-resolved a…
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It would be nice to be able to re-build the Metalign database in the same way that it was originally built (although it would be different, and larger, due to more genome assemblies being added to NCB…
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Hi,
The [readme.md](https://github.com/alekseyzimin/masurca) file lists two possible ways to estimate an appropriate value for the `JF_SIZE` parameter. The first one listed on that page states:
```
…
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Hello!
I ran EarlGrey (v4.4.4) for multiple genomes (size between 500-600 Mb) using Slurm. Some jobs were completed but the others showed Out Of Memory (exit code 0).
For those OOM jobs, I chec…
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Hi,
In some(or many when genome size is large) cases, loess always stop abnormally because there are some big gaps between snp markers, any tips to deal with this problem?
Best,
Kun
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Dear Brant,
Im currently working on the phyluce tutorial IV: "Identifying UCE Loci and Designing Baits To Target Them" with data of my own, instead of the coleopterans genomes used for the tutorial…
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Following the same process as sourmash-bio/sourmash#2410, we will benchmark the genome-grist workflow with a combination of the six sequences listed in the sourmash-bio/sourmash#2410. My instinct is t…
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We have found an edge case that causes a lot of trouble for Diamond. We are aligning many complete protein sets from different organisms in all-vs-all Diamond jobs. We need to find both orthologs acro…
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Thank you for developing such a useful program. This is my first time running RepeatModeler and I'm still working out how to use it to the fullest extent. I'm really glad that you have the "-recoverDi…