issues
search
jonathonthill
/
MMAPPR2
Mutation Mapping Analysis Pipeline for Pooled RNA-Seq
4
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error about missing tmp file
#105
CCprinc
opened
1 year ago
0
How to run loess when there are large gaps in a chromosome?
#104
xiekunwhy
opened
4 years ago
3
Take out Rsamtools dependency
#103
kjohnsen
opened
5 years ago
0
Put plots in vignette
#102
kjohnsen
opened
5 years ago
0
Pileup
#101
kjohnsen
closed
5 years ago
0
Replace .runFunctionInParallel
#100
kjohnsen
closed
5 years ago
0
Toydata
#99
kjohnsen
closed
5 years ago
0
Output data on failure
#97
kjohnsen
opened
5 years ago
0
Runnable examples
#96
kjohnsen
closed
5 years ago
0
Good bioc check -- really fixed
#95
kjohnsen
closed
5 years ago
0
Bioc check fixed
#94
kjohnsen
closed
5 years ago
0
Remove compulsory progress bar
#93
kjohnsen
opened
5 years ago
0
Make package Windows-compatible
#92
kjohnsen
opened
5 years ago
0
BiocCheck
#91
kjohnsen
closed
5 years ago
0
Make outputMmapprData examples runnable
#90
kjohnsen
opened
5 years ago
0
Make plots flexible
#89
kjohnsen
opened
5 years ago
0
Don't get all sorts of chromosomes when peak isn't found
#88
kjohnsen
opened
6 years ago
0
Peak simulation with replacement
#87
kjohnsen
opened
6 years ago
0
Refactor data
#86
kjohnsen
closed
5 years ago
0
Update minMapQuality doc
#85
kjohnsen
closed
6 years ago
0
Make manuals and vignette code executable
#84
kjohnsen
opened
6 years ago
0
Refactor Data
#83
kjohnsen
closed
5 years ago
0
Update CITATION after paper is published
#82
kjohnsen
opened
6 years ago
0
Polish package for submission
#81
kjohnsen
closed
6 years ago
0
Implement replicate test
#80
kjohnsen
closed
6 years ago
0
Auto index
#79
kjohnsen
closed
6 years ago
0
Fix negative peak coordinates
#78
kjohnsen
opened
6 years ago
0
Implement default VEP
#77
kjohnsen
closed
6 years ago
0
Parallelize peak resampling
#76
kjohnsen
opened
6 years ago
0
Patch missing loess crash
#75
kjohnsen
closed
6 years ago
0
Handle failed Loess regression in prePeak
#74
kjohnsen
closed
6 years ago
0
Remove 'MT' from chromosomes
#73
kjohnsen
closed
6 years ago
0
Drop MT name (from Ensembl) from analysis
#72
kjohnsen
closed
6 years ago
0
Fix session info logging
#71
kjohnsen
closed
6 years ago
0
Update output.R
#70
kjohnsen
closed
6 years ago
0
Default folder log patch
#69
kjohnsen
closed
6 years ago
0
Fix doc export
#68
kjohnsen
closed
6 years ago
0
Overwrite output
#67
kjohnsen
closed
6 years ago
1
Refactor density plot
#66
kjohnsen
closed
6 years ago
0
Plot color
#65
kjohnsen
closed
6 years ago
0
Implement VCF output file
#64
kjohnsen
opened
6 years ago
0
Create Dockerfile/Docker image for easier install
#63
kjohnsen
opened
6 years ago
0
Create vignette
#62
kjohnsen
closed
5 years ago
0
Log file and some printing stuff
#61
kjohnsen
closed
6 years ago
0
Change plot peak color
#60
kjohnsen
closed
6 years ago
0
Create default vepFlags
#59
kjohnsen
closed
6 years ago
0
Fix variants
#58
kjohnsen
closed
6 years ago
0
Filter variants for homozygotes before running VEP
#57
kjohnsen
opened
6 years ago
0
Get generateCandidates working
#56
kjohnsen
closed
6 years ago
0
Replicates in variant calling tests
#55
kjohnsen
closed
6 years ago
0
Next