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Hi, I am attempting to use the classifySex function for mouse data, I defined genome='Mm' but I believe it is still attempting to classify using the human reference XIST instead of the mouse Xist. Bel…
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Hello! This tool is excellent. Currently, I have a set of regular RNA-seq sequencing data, and I would like to know if it can be used to analyze such data. thank you
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the envs/shared.yaml and envs/createIndices.yaml are created without issues.
but the whole process just fails in the next level
```bash
Creating environment (3/24) from envs/rna_seq.yaml with has…
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I tried to predict two RNA strands with cas9 (PDB ID: 4OO8).
However, RNA structures were crashed like fragment of skein.
Not only for this, but also same RNA structure were simulated without protei…
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### Ask away!
Hello,
I am trying to get the demo model to work using the following script on HPC and I get a couple of error Plus 4 more processes waiting for tasks…
Doing reference based transcr…
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Hi authors, great paper just a couple of nitpicks in the paper that might make it a little clearer.
1.
To use it you have to provide a set of contigs resulting of a de novo transcriptome assembly…
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The pre-period definitions for
DNA-directed 5'-3' RNA polymerase activity (GO:0003899)
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).
and
RNA polymerase I…
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I am running bam-readcount as part of an analysis of three samples. The first two finished in a few hours but the third has been running for 40h (with 100% use of one CPU) already.
`/usr/bin/bam-re…
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Hello,
Thank you for this extensive dataset! It seems that some of the necessary cell metadata to recreate the analyses in the paper is missing from GSE234788. For example, Figure1/fig1_RNA_qc_clus…
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Hello
Could you inform me if the raw RNA seq data used in this analysis are publicly available for download somewhere?
Thanks,
Guillaume